Organella Report
Your data stays local, nothing is uploaded.
Showing
Show as
A figure drawn entirely out of organelles, holding a measuring tape

Organella

measuring label relationships in 2D and 3D

distributionsdistancescontactspolarity3D
2Make a report 
pip install organella

organella dry-run experiment/
organella process experiment/ \
    -o report.parquet \
    --object-mask pm --with-mesh

dry-run reads headers only and says what would be measured. --object-mask names the mask that bounds each object, and everything inside it is measured relative to that. --with-mesh adds the geometry the 3D sections draw. Every flag is in the README.

1Open a report
Drop report.parquet here, or click to browse
Your data stays local, nothing is uploaded.
Or load from a URL

Ran with --with-mesh? Open the report, then press Add geometry and pick the report_meshes folder.

Reading your report…
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Overview

Groups
Structures
How much of each structure is there?
Looking at a single

Drag to orbit, scroll to zoom, shift-drag to pan. Colour by structure to read the layout, by a metric to see where the extremes sit, or by contact group to see which instances chain together at a given gap. Explode pushes every instance out along its own direction from the centre.

Structure by structure
Groups of one structure

Polarity


Radius
The files behind it

What was read, and what was measured of each whole structure.

Every file, per and structure
structurekind instancesextent boundary roundness aspectsizefile